Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs62439738 chr7:6779896 A/G 9.08E-5 487 31.12 29.97 35.28 KM Plot
PRAD rs62439743 chr7:6783138 C/T 7.78E-5 485 31.12 30.08 38.33 KM Plot
PRAD rs62468815 chr7:23538861 C/T 1.34E-5 484 30.9 29.13 33.47 KM Plot
PRAD rs62513768 chr8:143399187 C/T 5.34E-5 480 30.97 32.4 28.13 KM Plot
PRAD rs62525309 chr8:104031920 T/C 2.33E-12 488 31.25 28.47 18.15 KM Plot
PRAD rs62525313 chr8:104049606 C/T 2.9E-12 486 31.18 28.18 18.15 KM Plot
PRAD rs62525314 chr8:104061923 G/A 2.81E-12 488 31.07 28.18 18.15 KM Plot
PRAD rs62525315 chr8:104071424 T/C 1.26E-8 486 31.07 28.3 25.67 KM Plot
PRAD rs625273 chr11:71564346 G/A 5.88E-5 493 31.27 28.57 20.93 KM Plot
PRAD rs62576325 chr9:137248282 G/T 2.74E-6 475 32.63 28.57 26.77 KM Plot
PRAD rs6413916 chr1:201139616 C/T 4.03E-6 494 37.9 31.13 30.73 KM Plot
PRAD rs6413917 chr1:201139864 G/A 3.43E-6 494 33.37 31.87 30.23 KM Plot
PRAD rs6415820 chr9:118231832 A/C 0 493 15.03 30.33 31.07 KM Plot
PRAD rs6425730 chr1:31747393 T/C 1.78E-6 492 22.85 31.25 31.2 KM Plot
PRAD rs6425734 chr1:31764025 T/C 1.82E-6 493 22.85 31.25 31.27 KM Plot